Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs28384440 chr19:9731945 ACT/A 3.72E-14 290 22.4 19.83 3.33 KM Plot
CESC rs28494844 chr9:136266188 T/C 7.81E-5 290 21.2 26.13 11.6 KM Plot
CESC rs28602295 chr9:136267471 G/A 7.81E-5 290 21.2 26.13 11.6 KM Plot
CESC rs28622217 chr9:136267323 A/G 7.81E-5 290 21.2 26.13 11.6 KM Plot
CESC rs28625799 chr9:136264557 C/T 7.81E-5 290 21.2 26.13 11.6 KM Plot
CESC rs28674941 chr18:69256827 T/C 1.89E-5 295 21.17 27.4 11.6 KM Plot
CESC rs28695338 chr15:99235402 C/A 4.36E-5 296 21.2 23.43 11.6 KM Plot
CESC rs28721280 chr9:136267318 C/G 7.81E-5 290 21.2 26.13 11.6 KM Plot
CESC rs28723011 chr9:136264028 C/A 7.81E-5 290 21.2 26.13 11.6 KM Plot
CESC rs28793087 chr18:69256871 A/G 1.89E-5 295 21.17 27.4 11.6 KM Plot
CESC rs28813740 chr4:98954310 C/T 0 297 22.93 19.05 0.72 KM Plot
CESC rs2883128 chr10:88153732 G/C 2.08E-14 296 3.33 24.3 21.17 KM Plot
CESC rs28882808 chr4:98954680 G/C 0 297 22.93 19.05 0.72 KM Plot
CESC rs2922826 chr8:6421473 C/T 2.92E-11 290 3.47 22.87 21.2 KM Plot
CESC rs2946559 chr2:222450720 A/C 4.89E-5 299 16.87 23.3 21.23 KM Plot